MmuEX6088394 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84715602-84719145:+
Coord C1 exon
chr11:84715602-84715709
Coord A exon
chr11:84716659-84716729
Coord C2 exon
chr11:84719042-84719145
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCCCACCCTTATAGGTC
3' ss Score
10.32
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTACATAATACAACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCACAGACTTTCCTCCAAGAAGAG
Seq A exon
GTCCTGAACCAGTTAGAGGCCTGTGGCCTTGTGGAAACCATTCACATCAGTGCTGCTGGCTTTCCCATCCG
Seq C2 exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=PD(4.3=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACCCCACTACATTCGC
R:
CAGAGGACCCTTCGGCAGG
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: