GgaEX0007445 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8084272-8086063:-
Coord C1 exon
chr19:8085956-8086063
Coord A exon
chr19:8085309-8085379
Coord C2 exon
chr19:8084272-8084381
Length
71 bp
Sequences
Splice sites
3' ss Seq
CAACTCAATTTGTGCCTCAGGTT
3' ss Score
6.33
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AGTTCACTTGAAAATCTCATGCAGATCTTGAACAGCACCGAACCACATTACATCCGATGCATCAAGCCTAATGCTGACTGCCAGGCAATGACTTTTAGAAAAGAAGAG
Seq A exon
GTTCTTAGCCAGCTTCAGGCATGTGGAATAGTTGAAGCCATCACCATCAGCGCAGCAGGCTTCCCTATTAG
Seq C2 exon
GATCTCTTTTCAAAGTTTCACCGATCGCTATGAAATACTGAGAAAGTCACGTAGGTCCAGCAAAAACAATGCATGTGATAAAAGCAACTACCATACTGCCAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATCTTGAACAGCACCG
R:
TCACATGCATTGTTTTTGCTGGA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]