HsaEX0041077 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34856909-34861243:-
Coord C1 exon
chr17:34861136-34861243
Coord A exon
chr17:34859790-34859860
Coord C2 exon
chr17:34856909-34857075
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCCCCACCCTTGCAGGTC
3' ss Score
12.25
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAG
Seq A exon
GTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCG
Seq C2 exon
AATGGTGTCCACACAGCGAGGAAGCCACGCTTGAACCTCTCATCCAGGACATTCTCCACACTCTGCCGGTCCTAACTCAGGCAGCAGCCATAACTGGTGACTCGGCTGAGGCCATGCCAGCCCCCATGCACTGTGGCAGGACCAAGGTGTTCATGACTGACTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140_MULTIEX1-5/12=4-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.002 C2=0.005
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=PD(1.2=22.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTGCAGGTCCTACACA
R:
CTGAGTTAGGACCGGCAGAGT
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)