DreEX6009108 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5270028-5287556:-
Coord C1 exon
chr5:5287467-5287556
Coord A exon
chr5:5286159-5286422
Coord C2 exon
chr5:5270028-5270303
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTGTCATTTTTGCAGATC
3' ss Score
10.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTAAAGCCTGGAACGGAGTATGGGATTGGAGTCACAGCCGTGCAGAATGAAAGAGAAAGTGAACCAGCAACCACAAATGCACTCACCG
Seq A exon
ATCTGGATCCTCCTCGAGACTTGGAAGTTCAGAGCTCCACTGAAACCAGCGTGGATCTGGTCTGGAAGAGGCCGAGGGCCAAGATCTCCACCTACAGGCTGGCGTATGTGTCTGTGGAAGGGCGGCGGGAGGAAATTGAGCTGCCAGCCAGTGCGAGCACCTCCACACTGAGCGGCCTGATGCCTGGCATGAGCTACACAGTGACCCTGGTGGCTGAACGTGGACACAGAAGAAGCGCTCCTGCTACCGTCACCGCATCCACAG
Seq C2 exon
AGGAGCAGAAGCCCCAGATTGGCAGTCTGAGTTTGTCTGATGTATCTTGGGATAGTTTCAATGTGTCCTGGATCATTGAGGACGGTCCTGCCTTTGACAGTTTTGTGATTGAAGTGGCAAATTCTGCAGGTCCCGAAAGACAAAACCTTTCAGTATCGGGCGATGCACGTGACTTATGGATGTCCGGACTCAGTCCTGGCACGTCCTATATGATTACGTTGTATGGTGTGCATCAGGGCTCGATCCTGGGCTCCATCAACGTTGAAGCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'3-20,'3-9,13-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=0.427 C2=0.108
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.4=74.2)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGACCCAGTGTGCAGACG
R:
TAAACCACAGCTGACGTGTCC
Band lengths:
305-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]