DreEX0008937 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5244294-5286422:-
Coord C1 exon
chr5:5286159-5286422
Coord A exon
chr5:5253560-5253832
Coord C2 exon
chr5:5244294-5244416
Length
273 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTCTCCCCCTGTAGCGG
3' ss Score
9.81
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCTGGATCCTCCTCGAGACTTGGAAGTTCAGAGCTCCACTGAAACCAGCGTGGATCTGGTCTGGAAGAGGCCGAGGGCCAAGATCTCCACCTACAGGCTGGCGTATGTGTCTGTGGAAGGGCGGCGGGAGGAAATTGAGCTGCCAGCCAGTGCGAGCACCTCCACACTGAGCGGCCTGATGCCTGGCATGAGCTACACAGTGACCCTGGTGGCTGAACGTGGACACAGAAGAAGCGCTCCTGCTACCGTCACCGCATCCACAG
Seq A exon
CGGCCGAGCCTGACTTGTCTGGACTAGTTGTTTCAAACGTAACCTCAGACTCAGTGTCGCTCTCCTGGCGGACGGGAGAGAAGGCCTTTGATAACTTTATAGTGGAGGTCAGAGAGTCTGCTTTGCCCTCGCAGGCGTCGGGGCGAACGTTTGGGGCAGGTGTTCGCTCTGCGGTGCTGAACGGCTTGAGAGGAAACACCACATATCAGATCAAGCTGTACGCCACTGTCGCTGGTGCCAACACTGATGCCCTCACCACTGTAGTGACCACAG
Seq C2 exon
GCCTCGGAGCTCTACGAGATCTTCATTTCTCTGATATCACGGACACGTCAGCTGTGGTTTACTGGACTTTACCTCGTGCTCAACCTGACTCTTACAGAATCACCCTCATCCCAATACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362_MULTIEX1-3/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=PU(48.8=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCTGGTCTGGAAGAGGC
R:
AGTCAGGTTGAGCACGAGGTA
Band lengths:
303-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]