DreEX6009109 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5240745-5246953:-
Coord C1 exon
chr5:5246681-5246953
Coord A exon
chr5:5244294-5244416
Coord C2 exon
chr5:5240745-5240888
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGTTTATGTTGTCTGACAGGCC
3' ss Score
9.88
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGGCAGAACCAGAGATCGAGCATCTATTCGTGTCAGACGTCACACCTGAGAGTTTCCGTCTGTCCTGGACCACAGAAGACGATGTCTTTGACCGATTTGTGCTCAAAGTTAGAGATTCCAGAAAGCTGTCTCACCCCAGAGAGTTCAGCATGTCGGGCGATGAGAGAACCAAAGTTTTAACACAGCTTTTGGGGGGAACAGAGTATGAAATTGAGCTTTACGGCGTGACGTTGGAACGGAGATCACAACCTGTTACTGCAGTGGTGAAGACAG
Seq A exon
GCCTCGGAGCTCTACGAGATCTTCATTTCTCTGATATCACGGACACGTCAGCTGTGGTTTACTGGACTTTACCTCGTGCTCAACCTGACTCTTACAGAATCACCCTCATCCCAATACAAGGAG
Seq C2 exon
GAAGTCCCATGATTGTGCAGGTGGACGGATCGCAGTCTCAGGTTTCTCTGAGGAATCTGATTCCTGGAGAGACGTATCAGGTGTCTGTTATTGCAGTGAAGGGTCTGGAGGAGAGCGAACCCGTGTCTGACACTTTTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'17-26,'17-20,23-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
PF0004116=fn3=PU(48.8=92.9)
C2:
PF0004116=fn3=PD(50.0=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]