DreEX0008930 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5286159-5288021:-
Coord C1 exon
chr5:5287836-5288021
Coord A exon
chr5:5287467-5287556
Coord C2 exon
chr5:5286159-5286422
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACATTTTTGTGTGCTGTAGGCT
3' ss Score
8.73
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GCCTGGATGCTCCCAGTGAGCTCAGAGCTGTGGATCAGACTGACAGCAGCATCACGCTGGAGTGGAAAAACAGCCGCTCGTCCATTGATGGATACCGCATCAAATACGGCCCAATTGCAGGAGGTGCTCATGGAGAAGACATGTTCCCTAAAAAAGCAGGAGACACAACCTGGGCCACAATTACAG
Seq A exon
GCTTAAAGCCTGGAACGGAGTATGGGATTGGAGTCACAGCCGTGCAGAATGAAAGAGAAAGTGAACCAGCAACCACAAATGCACTCACCG
Seq C2 exon
ATCTGGATCCTCCTCGAGACTTGGAAGTTCAGAGCTCCACTGAAACCAGCGTGGATCTGGTCTGGAAGAGGCCGAGGGCCAAGATCTCCACCTACAGGCTGGCGTATGTGTCTGTGGAAGGGCGGCGGGAGGAAATTGAGCTGCCAGCCAGTGCGAGCACCTCCACACTGAGCGGCCTGATGCCTGGCATGAGCTACACAGTGACCCTGGTGGCTGAACGTGGACACAGAAGAAGCGCTCCTGCTACCGTCACCGCATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.710 C2=0.427
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(71.4=95.2)
A:
PF0004116=fn3=PD(27.4=74.2)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACGGCCCAATTGCAGGAG
R:
GTAGGTGGAGATCTTGGCCCT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]