DreEX6009107 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5287467-5291004:-
Coord C1 exon
chr5:5290735-5291004
Coord A exon
chr5:5287836-5288021
Coord C2 exon
chr5:5287467-5287556
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTGTGTTTGTCAGGCC
3' ss Score
7.58
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GAATCGATTCTCCGGCTCAAATCGAAGTTGCCGATGTGACTGACCGATCGGCGGTGATCTCCTGGTCCAAACCCTTGGCTCCGGTGGACGGGTTTAAGGTTTCGTATGGGCCGAGCACAGATCCTTTAATCCACCGTGATGTTGAGCTCTCTGCCTCAGAGACACAGTACAGCCTGGAAGACCTGAAACCAGACACTCAATACAGAGTCGCCCTCAGTTCACAGAGAGGAGACGTGACCAGTGAACCCATCATAGAGAGCTTCACCACCG
Seq A exon
GCCTGGATGCTCCCAGTGAGCTCAGAGCTGTGGATCAGACTGACAGCAGCATCACGCTGGAGTGGAAAAACAGCCGCTCGTCCATTGATGGATACCGCATCAAATACGGCCCAATTGCAGGAGGTGCTCATGGAGAAGACATGTTCCCTAAAAAAGCAGGAGACACAACCTGGGCCACAATTACAG
Seq C2 exon
GCTTAAAGCCTGGAACGGAGTATGGGATTGGAGTCACAGCCGTGCAGAATGAAAGAGAAAGTGAACCAGCAACCACAAATGCACTCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'1-14,'1-7,11-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.397 C2=0.710
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.0)
A:
PF0004116=fn3=PU(71.4=95.2)
C2:
PF0004116=fn3=PD(27.4=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]