DreEX0008934 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5287836-5297687:-
Coord C1 exon
chr5:5297534-5297687
Coord A exon
chr5:5290735-5291004
Coord C2 exon
chr5:5287836-5288021
Length
270 bp
Sequences
Splice sites
3' ss Seq
TTATCCTCCTGTTCTTGTAGGAA
3' ss Score
10.94
5' ss Seq
CCGGTACGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAGAAGAAAATGGAAAGATTGTGAACAACCTGACCCCTTCTCAGACTACCTTTGAGCAACAGGGACTCGGACCAGGACAGGAATATGAAGTCACTTTATCGGTCATAAAGAACAACACCAGAGGACCAGAAACCAGCTCCACTGTAGTCACAA
Seq A exon
GAATCGATTCTCCGGCTCAAATCGAAGTTGCCGATGTGACTGACCGATCGGCGGTGATCTCCTGGTCCAAACCCTTGGCTCCGGTGGACGGGTTTAAGGTTTCGTATGGGCCGAGCACAGATCCTTTAATCCACCGTGATGTTGAGCTCTCTGCCTCAGAGACACAGTACAGCCTGGAAGACCTGAAACCAGACACTCAATACAGAGTCGCCCTCAGTTCACAGAGAGGAGACGTGACCAGTGAACCCATCATAGAGAGCTTCACCACCG
Seq C2 exon
GCCTGGATGCTCCCAGTGAGCTCAGAGCTGTGGATCAGACTGACAGCAGCATCACGCTGGAGTGGAAAAACAGCCGCTCGTCCATTGATGGATACCGCATCAAATACGGCCCAATTGCAGGAGGTGCTCATGGAGAAGACATGTTCCCTAAAAAAGCAGGAGACACAACCTGGGCCACAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'8-7,'8-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.319 C2=0.397
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=84.6)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCTGACCCCTTCTCAGA
R:
CCAGGTTGTGTCTCCTGCTTT
Band lengths:
302-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]