DreEX6009106 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5290735-5304986:-
Coord C1 exon
chr5:5304871-5304986
Coord A exon
chr5:5297534-5297687
Coord C2 exon
chr5:5290735-5291004
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTCTCACTTACAGAAA
3' ss Score
10.97
5' ss Seq
CAAGTAAAG
5' ss Score
2.69
Exon sequences
Seq C1 exon
ATCTCCCTCAGCCTGAAGGCCTGCGCTTTACATCCATCACAGACTCGACAGTGGAGGTTGTGTGGGAGCAGCTCAACTTCCCTTTCGATGGCTGGGAGCTTATCTTCAGAAACACG
Seq A exon
AAAGAAGAAAATGGAAAGATTGTGAACAACCTGACCCCTTCTCAGACTACCTTTGAGCAACAGGGACTCGGACCAGGACAGGAATATGAAGTCACTTTATCGGTCATAAAGAACAACACCAGAGGACCAGAAACCAGCTCCACTGTAGTCACAA
Seq C2 exon
GAATCGATTCTCCGGCTCAAATCGAAGTTGCCGATGTGACTGACCGATCGGCGGTGATCTCCTGGTCCAAACCCTTGGCTCCGGTGGACGGGTTTAAGGTTTCGTATGGGCCGAGCACAGATCCTTTAATCCACCGTGATGTTGAGCTCTCTGCCTCAGAGACACAGTACAGCCTGGAAGACCTGAAACCAGACACTCAATACAGAGTCGCCCTCAGTTCACAGAGAGGAGACGTGACCAGTGAACCCATCATAGAGAGCTTCACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'1-14,'1-5,8-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.654 C2=0.319
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(43.9=92.3)
A:
PF0004116=fn3=PD(53.7=84.6)
C2:
PF0004116=fn3=WD(100=89.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]