DreEX0008933 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5297534-5306054:-
Coord C1 exon
chr5:5305791-5306054
Coord A exon
chr5:5304871-5304986
Coord C2 exon
chr5:5297534-5297687
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATGCTGCTGTTTCTCCTCAGATC
3' ss Score
11.29
5' ss Seq
ACGGTCAGA
5' ss Score
5.42
Exon sequences
Seq C1 exon
TTTCTCCGCCGGAGGATCTTACCGTGACTGATGTGAGCACGCAGAAGGTGAACCTGACGTGGAGGAATGAGATGCTGGTGACGGAGTATCTGATCACGTATGTGCCAACGGCTCCAGGCGGCCTGCAGATGGACTTCAGGGTTGCTGGAGATCGAACATCCGCCACAGTCTCTGAGCTTGAACCGGGAATCGAGTATCTGATCAATGTCTACGCCGTCCTCAACAACAAGAGAAGCATTCCTGTCAGTGCCAGAGTGGCCACAT
Seq A exon
ATCTCCCTCAGCCTGAAGGCCTGCGCTTTACATCCATCACAGACTCGACAGTGGAGGTTGTGTGGGAGCAGCTCAACTTCCCTTTCGATGGCTGGGAGCTTATCTTCAGAAACACG
Seq C2 exon
AAAGAAGAAAATGGAAAGATTGTGAACAACCTGACCCCTTCTCAGACTACCTTTGAGCAACAGGGACTCGGACCAGGACAGGAATATGAAGTCACTTTATCGGTCATAAAGAACAACACCAGAGGACCAGAAACCAGCTCCACTGTAGTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.654
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(43.9=92.3)
C2:
PF0004116=fn3=PD(53.7=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATCCGCCACAGTCTCTG
R:
TGGTTTCTGGTCCTCTGGTGT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]