GgaEX6014925 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3071497-3073007:-
Coord C1 exon
chr17:3072744-3073007
Coord A exon
chr17:3071756-3071871
Coord C2 exon
chr17:3071497-3071656
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATTTTGTCACAGATT
3' ss Score
8.01
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGTCTCCTCCAACAGAGCTGACTGTAACGAATGTAACAGATAAAACGGTAAATCTGGAATGGAAGCATGAGAATCTCGTCAATGAGTACCTTGTCACCTATGTCCCTACCAGCAGTGGTGGCTTAGATCTACAGTTCACCGTACCAGGAAACCAGACATCTGCCACTATTCATGAGCTGGAGCCTGGTGTGGAATACTTCATCCGTGTCTTTGCAATCCTTAAAAACAAGAAAAGTATTCCAGTCAGTGCCAGAGTAGCGACAT
Seq A exon
ATTTGCCTGCTCCAGAAGGTCTGAAATTCAAATCTGTTAGAGAAACGTCTGTCCAGGTGGAATGGGATCCTCTGAGCATTTCCTTTGATGGCTGGGAGCTGGTCTTTCGTAATATG
Seq C2 exon
CAGAAAAAGGATGATAATGGAGACATAACCAGCAGCTTGAAAAGGCCGGAGACATCATATATGCAGCCAGGATTGGCACCAGGACAACAGTATAATGTATCCCTTCATATAGTGAAAAACAATACCAGAGGACCAGGGCTATCCCGAGTGATAACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.519
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=PU(43.4=92.3)
C2:
PF0004116=fn3=PD(54.2=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGTGGTGGCTTAGATC
R:
ACTGTTGTCCTGGTGCCAATC
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]