RnoEX6022120 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79842977-79845044:-
Coord C1 exon
chr5:79844781-79845044
Coord A exon
chr5:79843822-79843937
Coord C2 exon
chr5:79842977-79843133
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGCTATTCCTTACAGACT
3' ss Score
9.08
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTGGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCTACCACCATCCGGGAGCTGGAGCCAGGAGTGGAGTACTTCATTCATGTGTTCGCCATCTTGGAGAACAAGAGGAGCATCCCTGTCAGTGCCAGAGTTGCCACCT
Seq A exon
ACTTGCCTGCACCTGAAGGCCTAAAATTCAAGTCTATCAAGGAGACATCTGTGGAAGTAGAGTGGGATCCTCTGGACATCGCTTTTGAAACGTGGGAGATCATTTTCAGAAATATG
Seq C2 exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGCTTGAGGAGGCCAGAGACCTCCTACCGCCAAACTGGCCTGGCTCCTGGCCAAGAATATGAAATATCTCTTCACATTGTGAAAAACAACACCCGAGGCCCTGGCTTGAAGAAAGTGACCACAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'7-11,'7-8,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.509
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(43.9=92.3)
C2:
PF0004116=fn3=PD(53.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCTACCACCATCCGGGA
R:
TCACTTTCTTCAAGCCAGGGC
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]