BtaEX6036161 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106028217-106030944:-
Coord C1 exon
chr8:106030681-106030944
Coord A exon
chr8:106029446-106029561
Coord C2 exon
chr8:106028217-106028373
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCTCTTCCTGACAGACC
3' ss Score
11.13
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGTCCCCTCCCAAAGACCTTGTCGTGACAGAAGTGACAGAAGAGACCGTAAACCTGGCCTGGGACAATGAGATGCGGGTCACGGAGTACCTCATCGTGTACACACCCACCCACGAGGATGGCCTGGAAATGCAGTTCCGGGTCCCTGGAGACCAGACGTCCGCCACCATCCGGGAGCTGGAGCCTGGAGTGGAGTACTTCATCCGTGTGTTCGCCATCCTGGAGAACAAGAAGAGCATTCCAGTCAGCGCCAGGGTGGCCACAT
Seq A exon
ACCTGCCTACACCTGAAGGTCTAAAATTCAAGTCCATCAAGGAGACATCTGTGGAAGTGGAGTGGGATCCTCTGGACATTGCTTTTGAAACATGGGAGGTCATCTTCCGGAATATG
Seq C2 exon
AATAAAGACGATGAGGAAGAGATCACCAAGAGCCTGCGGAGGCCGGAGACCACGTACCGGCAAACTGGCCTGGCTCCCGGGCAGGAGTATGAGATATCCTTGCACATTGTGAAAAACAATACCCGGGGCCCTGGCCTGAAGAGAGTGACAACTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.000 C2=0.547
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=PU(43.9=92.3)
C2:
PF0004116=fn3=PD(53.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTGGAAATGCAGTTCC
R:
TATCTCATACTCCTGCCCGGG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]