DreEX6011161 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:28000392-28001665:-
Coord C1 exon
chr5:28001402-28001665
Coord A exon
chr5:28001207-28001322
Coord C2 exon
chr5:28000392-28000545
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTCCATATCTTACAATCAGATC
3' ss Score
6.16
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCTCCCCACCCAGAGACCTTACTGTGACTGAGGTCGACCCAGAAACAGTGGACGTCGCCTGGGTTAATGAGATGCTTGTGACAGAGTATCTTATCACCTATGTACCTACGGCTCCTGGAGGTTTGGAGATGGAAATGAGAGTATCTGGTGAAAAGAAGACAGCTACTATTAGGGAGCTAGAGCCTGGCATAGAGTACCTAATCAGTGTCTTTGCAGTTCTCAACAGCAAGATGAGCGTCCCTGTCAGTGCCAGAATAGCCACAC
Seq A exon
ATCTTCCTGAACCTGAGGGCCTGAAATTCAAATCCGTGAAAGAGACTTCAGTGGAGGTTGAGTGGGACCCCTTGAACATCCCGTTTGATGGCTGGAATCTGATCTTCAGAAACACA
Seq C2 exon
AAAGAAGAAGATGGAGAGATTTTGAACTCTCTCGCTCCTCCTGAGACCACCTTTGAGCAGTCTGGACTTGGACCTGGACAAGAGTATGAAGTTAAGCTTGAAGTCGTAAAGAACAACACCCGTGGACCCCCAGCCAGCAAGAACGTTGTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.026 C2=0.769
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(43.9=92.3)
C2:
PF0004116=fn3=PD(53.7=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCGCCTGGGTTAATGAG
R:
CAGGAGGAGCGAGAGAGTTCA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]