MmuEX6093953 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:64013068-64015158:-
Coord C1 exon
chr4:64014895-64015158
Coord A exon
chr4:64013929-64014044
Coord C2 exon
chr4:64013068-64013224
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGCTGTTACTTACAGATT
3' ss Score
9.21
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTAGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCCACCACCATTCGGGAGCTGGAACCAGGGGTGGAGTACTTCATTCGTGTGTTCGCCATCTTGGAAAACAAGAGGAGCATCCCTGTCAGTGCCAGGGTTGCCACCT
Seq A exon
ATTTGCCTGCACCTGAAGGTCTAAAATTCAAGTCTATCAAGGAGACATCTGTGGAAGTAGAGTGGGATCCTCTAGACATTGCTTTCGAAACATGGGAGATCATTTTCCGAAATATG
Seq C2 exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGTCTGAGGAGACCAGAGACCTCCTACCGCCAAACTGGCCTTGCTCCTGGCCAAGAGTATGAAATATCTCTGCACATTGTGAAAAACAACACCCGAGGCCCCGGCTTGAAGAAAGTAACCACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(43.9=92.3)
C2:
PF0004116=fn3=PD(53.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATGCGGGTCACTGAGT
R:
AGGAGGTCTCTGGTCTCCTCA
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types