DreEX6009105 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5304871-5307528:-
Coord C1 exon
chr5:5306215-5307528
Coord A exon
chr5:5305791-5306054
Coord C2 exon
chr5:5304871-5304986
Length
264 bp
Sequences
Splice sites
3' ss Seq
GCCTGTAATATGTTGTGCAGTTT
3' ss Score
3.7
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GTGCAATAGGAACGAAGCCCTTCTGCAGTGGACATGGAAACTACAGCACTGAGACCTGCGGATGTGTCTGTGCTCCCGGATGGAAAGGCCTAAACTGCACCATTCCCGACTGTCCTGGAGACTGTAGCGATCAAGGCCGTTGTGTTAACGGGAAGTGTGAGTGTTTCGAAGGCTTCACCGGTGACGACTGCAGCACTGATGCCTGTCTGATTGACTGCGGTGATAATGGTCGTTGCCTTAACGGGAAGTGCGTTTGCAGTGAGGGTTTCTCCGGGGAATATTGCACAGAGTCGGATTGCCTTAACAACTGTTTGGGACGCGGCCGCTGTGTGGATGGCGAATGTGTTTGCGATGAACCCTGGACTGGATTTGATTGCTCTGAACTCATCTGTCCGAACGATTGCTACGATCGCGGACGATGCGAAAACGGGACTTGTTACTGTGACAGAGGATTCACCGGAGAAGATTGCGGGGCTCTTGCTTGTCCGAATGATTGCTCTGGACGAGGTTTCTGCATTGATGGACGCTGCGTATGCGATGCAGGATACACCGGCGAGGATTGTTCGAGTTTGACCTGTCCGAATAATTGCAATGATAGGGGGCGCTGTTCTAACGGCGTCTGCATTTGTGAAGTGGGCTTCCACGGAGAGGATTGTGGGAGAATTTCGTGCCCTAGCAATTGCAACAATCGAGGTCACTGCGTTGATGGACGTTGCGAATGTGATGTTGGCTTTCAAGGCCACGATTGTTCGGAGCTCAGCTGTCCTAATAATTGCAATAATCGCGGACGTTGCGTTAACGGTCAATGTGTTTGCGATGAGGGATTTGGGAGCGAGGATTGCGGTCTTAAAACCTGTCCATCAGACTGCTACGGTCGAGGTCAGTGCGTTGATGGTGAGTGCGTTTGTTTTGCTAACTTTGCGGGTGAAGATTGCAGTGAATTGCGCTGTCCCAATAGCTGCCAGAACCGCGGACGATGCATCGCAGGACAGTGTGTGTGCGATGAAGGTTTCACTGGCGAAGACTGCAGTCAGAGAAAGTGTCCCAATGACTGTCTTGGACGCGGACGCTGTGTTGACGGCCGGTGTGTCTGTCAGGATGGTTTTAAAGGCCAGGATTGCTCTGTTCCCACTTGTCCTGGAAACTGCAATGACCACGGGCGCTGCGTCAATGGAAAGTGTGTGTGCGATGAGGGATTTTTTGGAGATGCCTGCAGTGACAGAAGCTGTCTGAATGACTGCAGTGATGTGGGACAGTGCGTCGACGGCCGCTGCATTTGTGATGAGGGATACATTGGCGAGGATTGCTCAGACG
Seq A exon
TTTCTCCGCCGGAGGATCTTACCGTGACTGATGTGAGCACGCAGAAGGTGAACCTGACGTGGAGGAATGAGATGCTGGTGACGGAGTATCTGATCACGTATGTGCCAACGGCTCCAGGCGGCCTGCAGATGGACTTCAGGGTTGCTGGAGATCGAACATCCGCCACAGTCTCTGAGCTTGAACCGGGAATCGAGTATCTGATCAATGTCTACGCCGTCCTCAACAACAAGAGAAGCATTCCTGTCAGTGCCAGAGTGGCCACAT
Seq C2 exon
ATCTCCCTCAGCCTGAAGGCCTGCGCTTTACATCCATCACAGACTCGACAGTGGAGGTTGTGTGGGAGCAGCTCAACTTCCCTTTCGATGGCTGGGAGCTTATCTTCAGAAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'1-14,'1-3,6-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=7.1),PF079748=EGF_2=WD(100=6.6),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=7.1)
A:
PF0004116=fn3=WD(100=87.6)
C2:
PF0004116=fn3=PU(43.9=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]