MmuEX0048236 @ mm9

Exon Skipping

Gene

ENSMUSG00000028364 | Tnc

Description

tenascin C [Source:MGI Symbol;Acc:MGI:101922]

Coordinates

chr4:63674963-63679274:-

Coord C1 exon

chr4:63677865-63679274

Coord A exon

chr4:63675929-63676192

Coord C2 exon

chr4:63674963-63675078

Length

264 bp

Sequences

Splice sites

3' ss Seq

TCCTTTCTTATTCCTCTCAGTGT

3' ss Score

8.73

5' ss Seq

CCTGTGAGT

5' ss Score

7.21

Exon sequences

Seq C1 exon

TGAACAAGGCTTCAAGGGCTTTGACTGTAGTGAGATGAGCTGTCCCAATGACTGCCACCAACATGGCCGCTGTGTGAATGGCATGTGTATCTGTGATGACGACTACACTGGGGAAGACTGCAGAGACCGGCGCTGTCCCCGGGACTGTAGCCAGCGGGGGCGCTGTGTAGACGGACAGTGCATCTGTGAGGATGGCTTCACTGGCCCTGACTGTGCTGAGCTTTCCTGCCCCAGTGACTGCCACGGCCATGGCCGCTGTGTGAATGGCCAATGCATCTGCCACGAGGGCTTCACTGGCAAAGACTGCAAAGAGCAAAGGTGCCCCAGTGATTGCCATGGCCAAGGCCGCTGTGAGGACGGCCAGTGTATCTGCCATGAGGGCTTTACGGGCCTGGACTGTGGGCAGCGCTCCTGTCCCAATGACTGCAGCAACCAAGGACAATGTGTGTCAGGCCGCTGCATCTGCAATGAAGGTTACACAGGGATAGACTGCTCTGAGG

Seq A exon

TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTAGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCCACCACCATTCGGGAGCTGGAACCAGGGGTGGAGTACTTCATTCGTGTGTTCGCCATCTTGGAAAACAAGAGGAGCATCCCTGTCAGTGCCAGGGTTGCCACCT

Seq C2 exon

ATTTGCCTGCACCTGAAGGTCTAAAATTCAAGTCTATCAAGGAGACATCTGTGGAAGTAGAGTGGGATCCTCTAGACATTGCTTTCGAAACATGGGAGATCATTTTCCGAAATATG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000028364_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.101 C2=0.000

Domain overlap (PFAM):

C1:

PF126612=hEGF=WD(100=2.8),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF126612=hEGF=WD(100=2.8),PF0045114=Toxin_2=WD(100=6.2),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)

A:

PF0004116=fn3=WD(100=87.6)

C2:

PF0004116=fn3=PU(43.9=92.3)

Main Inclusion Isoform:

ENSMUSP00000102995