DreEX6011160 @ danRer10

Exon Skipping

Gene

ENSDARG00000021948 | tnc

Description

tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]

Coordinates

chr5:28001207-28004486:-

Coord C1 exon

chr5:28002894-28004486

Coord A exon

chr5:28001402-28001665

Coord C2 exon

chr5:28001207-28001322

Length

264 bp

Sequences

Splice sites

3' ss Seq

TGTCTTGTTTTAATCCACAGTCT

3' ss Score

9.22

5' ss Seq

CACGTGAGT

5' ss Score

9.3

Exon sequences

Seq C1 exon

TCATGACGGCTTTGCTGGAGAAGATTGCAGCATCAAAACCTGCCCTAATCACTGCCATGGACGTGGACGTTGCGTTGATGGCAAATGCATTTGCCATGATGGTTTTGCTGGAGAAGACTGCAACATCAAGACTTGTCCCAATGACTGTCATGATCATGGAGAGTGTGTGGATGGCAAGTGCATTTGCCATGCTGGCTTCACAGGCCACGACTGCAGTGAGTTGACTTGCCCCAATGACTGCCATAACCGAGGACGTTGTGTAAATGGGCAATGTGTGTGTAACATCGGGTTCACTGGGGAGGACTGTGGTACAAAGACATGTCCCAACAACTGTCTGGACCGTGGCTTCTGCGAAGATGGAAAGTGTGTCTGCTTTGAGGGCTACACCGGTGAGGATTGCTCTGTACTGACCTGCCCTGCAGACTGCAATGACCAAGGCCAGTGTCTGAATGGAATGTGCATATGTGATCTGGGCTTTACTGGCGATGACTGCTCTGAGA

Seq A exon

TCTCCCCACCCAGAGACCTTACTGTGACTGAGGTCGACCCAGAAACAGTGGACGTCGCCTGGGTTAATGAGATGCTTGTGACAGAGTATCTTATCACCTATGTACCTACGGCTCCTGGAGGTTTGGAGATGGAAATGAGAGTATCTGGTGAAAAGAAGACAGCTACTATTAGGGAGCTAGAGCCTGGCATAGAGTACCTAATCAGTGTCTTTGCAGTTCTCAACAGCAAGATGAGCGTCCCTGTCAGTGCCAGAATAGCCACAC

Seq C2 exon

ATCTTCCTGAACCTGAGGGCCTGAAATTCAAATCCGTGAAAGAGACTTCAGTGGAGGTTGAGTGGGACCCCTTGAACATCCCGTTTGATGGCTGGAATCTGATCTTCAGAAACACA

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000021948-'3-6,'3-5,4-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.124 C2=0.026

Domain overlap (PFAM):

C1:

PF152461=NCKAP5=PD(25.0=5.3),PF126612=hEGF=WD(100=2.4),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF126612=hEGF=WD(100=2.4),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1)

A:

PF0004116=fn3=WD(100=87.6)

C2:

PF0004116=fn3=PU(43.9=92.3)

Main Inclusion Isoform:

ENSDARP00000114191