GgaEX6014924 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3071756-3076076:-
Coord C1 exon
chr17:3074763-3076076
Coord A exon
chr17:3072744-3073007
Coord C2 exon
chr17:3071756-3071871
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTTCCCCTCTCTAGTGT
3' ss Score
9.94
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGATGAGGGATTCATTGGGGAGGACTGTGGAGAGCTGCGGTGCCCCAACGACTGCCACAACCGCGGGCGCTGCGTCAATGGGCAGTGCGAGTGCCACGAGGGATTCATCGGGGAGGACTGCGGGGAGCTGCGGTGTCCCAACGACTGCAACAGCCATGGGCGCTGTGTCAATGGGCAGTGCGTGTGTGATGAGGGGTACACAGGGGAGGACTGCGGGGAGTTGCGGTGCCCCAACGACTGCCACAACCGCGGGCGCTGCGTGGAGGGACGCTGTGTGTGTGACAACGGCTTCATGGGGGAGGACTGCGGGGAGCTGTCCTGTCCCAATGACTGCCACCAGCACGGGCGCTGCGTCGATGGGCGCTGCGTGTGCCATGAGGACTTCACTGGGGAAGACTGCCGGGAACGGTCCTGCCCCAATGACTGCAACAACGTGGGCCGCTGTGTCGAGGGACGGTGTGTCTGTGAGGAAGGTTACATGGGGATCGACTGTTCTGATG
Seq A exon
TGTCTCCTCCAACAGAGCTGACTGTAACGAATGTAACAGATAAAACGGTAAATCTGGAATGGAAGCATGAGAATCTCGTCAATGAGTACCTTGTCACCTATGTCCCTACCAGCAGTGGTGGCTTAGATCTACAGTTCACCGTACCAGGAAACCAGACATCTGCCACTATTCATGAGCTGGAGCCTGGTGTGGAATACTTCATCCGTGTCTTTGCAATCCTTAAAAACAAGAAAAGTATTCCAGTCAGTGCCAGAGTAGCGACAT
Seq C2 exon
ATTTGCCTGCTCCAGAAGGTCTGAAATTCAAATCTGTTAGAGAAACGTCTGTCCAGGTGGAATGGGATCCTCTGAGCATTTCCTTTGATGGCTGGGAGCTGGTCTTTCGTAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=3.0),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=PU(43.4=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGACAACGGCTTCAT
R:
AGAGGATCCCATTCCACCTGG
Band lengths:
300-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]