BtaEX6036160 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000000575 | TNC

Description

tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]

Coordinates

chr8:106029446-106033577:-

Coord C1 exon

chr8:106032168-106033577

Coord A exon

chr8:106030681-106030944

Coord C2 exon

chr8:106029446-106029561

Length

264 bp

Sequences

Splice sites

3' ss Seq

TCCTTCCTTTTTCCTGCCAGTGT

3' ss Score

9.58

5' ss Seq

CATGTGAGT

5' ss Score

7.83

Exon sequences

Seq C1 exon

CCAGCCTGGCTTCCAGGGTGATGACTGCGGCGAGATGAGCTGCCCGCACGATTGCCACCAGCACGGGCGCTGCGTGAACGGCATGTGTGTGTGTGACGACGCCTACACGGGCGAGGACTGCCGCGAACTCCGCTGCCCCGGGGACTGCAGCCAGCGCGGCCGCTGCGTGGACGGGCGCTGCGTGTGCGAGGACGGCTTCGCCGGCCCCGACTGCGCGGACCTCGCCTGTCCTGGCAACTGCCACGGCCGCGGGCGCTGCGTGGACGGCCAGTGCGTGTGCCTCGAGGGCTTCACCGGGCCCGACTGCGCGCAGCGCAGGTGTCCCGGCGACTGTCACGGCCAGGGCCGCTGCGTGGACGGCCAGTGCGTGTGCCACGAGGGCTTCACCGGACCCGACTGTGCACAGCGCTCCTGTCCCAACGACTGCAGCAACTGGGGGCAGTGCGTCTCTGGCCGCTGCGTTTGCAATGAGGGATACACCGGGGAAGACTGCTCCCAGG

Seq A exon

TGTCCCCTCCCAAAGACCTTGTCGTGACAGAAGTGACAGAAGAGACCGTAAACCTGGCCTGGGACAATGAGATGCGGGTCACGGAGTACCTCATCGTGTACACACCCACCCACGAGGATGGCCTGGAAATGCAGTTCCGGGTCCCTGGAGACCAGACGTCCGCCACCATCCGGGAGCTGGAGCCTGGAGTGGAGTACTTCATCCGTGTGTTCGCCATCCTGGAGAACAAGAAGAGCATTCCAGTCAGCGCCAGGGTGGCCACAT

Seq C2 exon

ACCTGCCTACACCTGAAGGTCTAAAATTCAAGTCCATCAAGGAGACATCTGTGGAAGTGGAGTGGGATCCTCTGGACATTGCTTTTGAAACATGGGAGGTCATCTTCCGGAATATG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000000575-'3-3,'3-2,4-3=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.112 C2=0.000

Domain overlap (PFAM):

C1:

PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)

A:

PF0004116=fn3=WD(100=88.8)

C2:

PF0004116=fn3=PU(43.9=92.3)

Main Inclusion Isoform:

ENSBTAP00000000752