HsaEX6062703 @ hg19

Exon Skipping

Gene

ENSG00000041982 | TNC

Description

tenascin C [Source:HGNC Symbol;Acc:5318]

Coordinates

chr9:117844971-117849552:-

Coord C1 exon

chr9:117848143-117849552

Coord A exon

chr9:117846488-117846751

Coord C2 exon

chr9:117844971-117845086

Length

264 bp

Sequences

Splice sites

3' ss Seq

TCCTTTCTTATTCCTGCCAGTGT

3' ss Score

7.75

5' ss Seq

CGTGTGAGT

5' ss Score

7.42

Exon sequences

Seq C1 exon

TGAGCAAGGCTTCAAGGGCTATGACTGCAGTGACATGAGCTGCCCTAATGACTGTCACCAGCACGGCCGCTGTGTGAATGGCATGTGTGTTTGTGATGACGGCTACACAGGGGAAGACTGCCGGGATCGCCAATGCCCCAGGGACTGCAGCAACAGGGGCCTCTGTGTGGACGGACAGTGCGTCTGTGAGGACGGCTTCACCGGCCCTGACTGTGCAGAACTCTCCTGTCCAAATGACTGCCATGGCCAGGGTCGCTGTGTGAATGGGCAGTGCGTGTGCCATGAAGGATTTATGGGCAAAGACTGCAAGGAGCAAAGATGTCCCAGTGACTGTCATGGCCAGGGCCGCTGCGTGGACGGCCAGTGCATCTGCCACGAGGGCTTCACAGGCCTGGACTGTGGCCAGCACTCCTGCCCCAGTGACTGCAACAACTTAGGACAATGCGTCTCGGGCCGCTGCATCTGCAACGAGGGCTACAGCGGAGAAGACTGCTCAGAGG

Seq A exon

TGTCTCCTCCCAAAGACCTCGTTGTGACAGAAGTGACGGAAGAGACGGTCAACCTGGCCTGGGACAATGAGATGCGGGTCACAGAGTACCTTGTCGTGTACACGCCCACCCACGAGGGTGGTCTGGAAATGCAGTTCCGTGTGCCTGGGGACCAGACGTCCACCATCATCCAGGAGCTGGAGCCTGGTGTGGAGTACTTTATCCGTGTATTTGCCATCCTGGAGAACAAGAAGAGCATTCCTGTCAGCGCCAGGGTGGCCACGT

Seq C2 exon

ACTTACCTGCACCTGAAGGCCTGAAATTCAAGTCCATCAAGGAGACATCTGTGGAAGTGGAGTGGGATCCTCTAGACATTGCTTTTGAAACCTGGGAGATCATCTTCCGGAATATG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000041982-'5-6,'5-5,6-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.045 C2=0.000

Domain overlap (PFAM):

C1:

PF126612=hEGF=WD(100=2.8),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF126612=hEGF=WD(100=2.8),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)

A:

PF0004116=fn3=WD(100=88.8)

C2:

PF0004116=fn3=PU(43.9=92.3)

Main Inclusion Isoform:

ENSP00000265131