RnoEX0092212 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79838363-79843133:-
Coord C1 exon
chr5:79842977-79843133
Coord A exon
chr5:79839333-79839602
Coord C2 exon
chr5:79838363-79838548
Length
270 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTGTTGGTCACAGGCC
3' ss Score
9.2
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGCTTGAGGAGGCCAGAGACCTCCTACCGCCAAACTGGCCTGGCTCCTGGCCAAGAATATGAAATATCTCTTCACATTGTGAAAAACAACACCCGAGGCCCTGGCTTGAAGAAAGTGACCACAACTC
Seq A exon
GCCTGGATGCCCCCAGCCAAATTGAGGTGAGAGACATCACAGACACTACAGCACTGATCACCTGGTCCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTGCCTGGAGACCGGACCACCATCGACCTCACACATGAAGACAACCAGTACTCCATCGGGAACCTGAAACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAGGAGACCTTCATCACAG
Seq C2 exon
GCCTGGATGCTCCCAGGAATCTCCGTCGCGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAATGTCAAGGCAGACATTGATAGTTATAGAATTAAGTATGCACCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'10-16,'10-15,12-16
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=0.363 C2=0.508
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTTGAGGAGGCCAGAGA
R:
GTTTTGGTTGTGGCTTGCTGG
Band lengths:
304-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]