BtaEX6036163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106023441-106028373:-
Coord C1 exon
chr8:106028217-106028373
Coord A exon
chr8:106024361-106024630
Coord C2 exon
chr8:106023441-106023626
Length
270 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTCTGCCTGTCACAGGCT
3' ss Score
8.21
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATAAAGACGATGAGGAAGAGATCACCAAGAGCCTGCGGAGGCCGGAGACCACGTACCGGCAAACTGGCCTGGCTCCCGGGCAGGAGTATGAGATATCCTTGCACATTGTGAAAAACAATACCCGGGGCCCTGGCCTGAAGAGAGTGACAACTACCC
Seq A exon
GCTTGGACGCCCCCAGCCAGATTGAAGTGAAAGATGTCACAGACACCACCGCTCTGATCACTTGGTCCAAGCCCCTGGCCGAGATCGATAGCATCGAGCTCATGTACGGGATCAAAGACGTGCCAGGAGATCGTACCAGCATCGATCTCACACACGAGGAGAACCAGTACTCCATTGGGAACTTGAAGCCGGACACCGAGTACGAGGTGGCCCTCATCTCCCGCAGGGCCGACATGTCCAGCAACCCCGCCAAAGAGACCTTCACAACAG
Seq C2 exon
GCCTGGATGCGCCCAGGAATCTCCGCCGCATCTCCCAGACAGACAACAGCATCACCCTGGAGTGGAGGAACGTCAAGGCAGCCGCCGACAGTTACAGAATTAAGTATGCACCCATCTCTGGAGGCGACCACGCGGAAGTAGAAGTCCCCAGGAGCCAACAGACCACAACCAGAACCACGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=0.462 C2=0.540
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGATCACCAAGAGCCTGC
R:
GGCTCCTGGGGACTTCTACTT
Band lengths:
297-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]