GgaEX6014926 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3070111-3071656:-
Coord C1 exon
chr17:3071497-3071656
Coord A exon
chr17:3070631-3070900
Coord C2 exon
chr17:3070111-3070296
Length
270 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCTCATTAAAACAGAAC
3' ss Score
7.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAGAAAAAGGATGATAATGGAGACATAACCAGCAGCTTGAAAAGGCCGGAGACATCATATATGCAGCCAGGATTGGCACCAGGACAACAGTATAATGTATCCCTTCATATAGTGAAAAACAATACCAGAGGACCAGGGCTATCCCGAGTGATAACCACAA
Seq A exon
AACTCGATGCCCCTAGCCAGATTGAAGCGAAAGATGTCACAGACACCACAGCTCTGATCACATGGTCCAAACCCTTGGCTGAAATTGAAGGCATAGAGCTCACATATGGCCCCAAGGATGTTCCAGGGGACAGGACTACCATTGACCTCTCTGAGGATGAAAACCAATATTCTATTGGAAACCTGAGGCCACACACAGAATATGAAGTGATACTCATTTCTCGGCGAGGGGACATGGAGAGTGACCCTGCAAAAGAAGTCTTTGTCACAG
Seq C2 exon
ACTTGGATGCTCCACGAAACCTGAAGCGAGTGTCACAGACAGACAACAGCATTACTTTGGAGTGGAAGAACAGCCATGCAAATATTGATAATTACCGAATTAAGTTTGCTCCCATTTCTGGTGGAGACCACACTGAGCTGACAGTGCCAAAGGGCAACCAAGCAACAACCAGAGCTACACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.495 C2=0.556
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(54.2=83.3)
A:
PF0004116=fn3=WD(100=90.1)
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAAAGGCCGGAGACAT
R:
AGCTCTGGTTGTTGCTTGGTT
Band lengths:
302-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]