MmuEX6093955 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:64007682-64013224:-
Coord C1 exon
chr4:64013068-64013224
Coord A exon
chr4:64008614-64008883
Coord C2 exon
chr4:64007682-64007867
Length
270 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTTTGTTGGTCTCAGGCC
3' ss Score
7.02
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGTCTGAGGAGACCAGAGACCTCCTACCGCCAAACTGGCCTTGCTCCTGGCCAAGAGTATGAAATATCTCTGCACATTGTGAAAAACAACACCCGAGGCCCCGGCTTGAAGAAAGTAACCACAACCC
Seq A exon
GCCTGGATGCCCCCAGCCATATTGAGGTGAAAGATGTCACAGACACCACAGCACTGATCACCTGGTTCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTACCTGGAGACCGTACCACCATCGACCTCACACACGAAGACAACCAGTACTCCATCGGGAACCTGAGACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAAGAGACCTTCATCACAG
Seq C2 exon
GCCTGGATGCTCCCAGGAATCTCCGCCGTGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAACGTCAAGGCAGACATCGACAGTTACAGAATTAAGTATGCCCCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'8-13,'8-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.319 C2=0.476
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(71.4=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGACCAGAGACCTCCT
R:
GTTTTGGTTGTGGCTTGCTGG
Band lengths:
298-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types