DreEX6011162 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27992200-28000545:-
Coord C1 exon
chr5:28000392-28000545
Coord A exon
chr5:27995300-27995569
Coord C2 exon
chr5:27992200-27992385
Length
270 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTCTCATCTGCAGTGA
3' ss Score
9.59
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAGAAGAAGATGGAGAGATTTTGAACTCTCTCGCTCCTCCTGAGACCACCTTTGAGCAGTCTGGACTTGGACCTGGACAAGAGTATGAAGTTAAGCTTGAAGTCGTAAAGAACAACACCCGTGGACCCCCAGCCAGCAAGAACGTTGTCACAA
Seq A exon
TGATTGATGCTCCTAGCCAGGTGGATGTGCGTGACGTGACGGACACAACAGCCCTGGTCACGTGGCTTCAGCCTGTCGCTCAGGTGGACGGCATCTCTGTTTCCTATGGCCCAAACACAGACTCCTCCGACAGGAACACAATCGAGCTTTCCTCCATAGAAACCCAGTACCATCTGGCTGAGCTGTCTCCTGACACTGAGTATGAGGTCTCTCTTATGGCCCGCCGGGGAGAGATGAGCAGCTTCCCCATCTATGAGACCTTCACAACAG
Seq C2 exon
ATCTGGATTCCCCAAAGCACCTCAAGGCAATTGAGCAGACAGATGAGAGCATAACTCTGGAGTGGAGAAACAGCAGAGCCAACGTCCTCAATTACCGTGTCAAATACGGCCCACTTTCTGGAGGGGAGCATGGAGAGCTGGTCTTCCCCAGCGGCCTGCAAGACACCACTCAGGCTAAGATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'6-11,'6-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.363 C2=0.349
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=84.6)
A:
PF0004116=fn3=WD(100=87.9)
C2:
PF0004116=fn3=PU(72.3=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGACCACCTTTGAGCA
R:
TAGCCTGAGTGGTGTCTTGCA
Band lengths:
293-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]