DreEX6010689 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24053493-24057375:+
Coord C1 exon
chr5:24053493-24053612
Coord A exon
chr5:24057064-24057183
Coord C2 exon
chr5:24057258-24057375
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTGTTGTGTGTGCAGGGT
3' ss Score
8.19
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GCTGGATTTCAAGTGTTCTTGGTGATCGTTGCTGTGTTTTCTGTGCCTGTGTTATTATTTGGTAAACCCCTCTACATCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGG
Seq A exon
GGTTACCAGCGTGTGCGCAGGAGCAGTGAGGAGGAGCTTTCTCTCTTGCACACTCATGACTTGGAGGAGGGCAGCAGTCTGGACAGCCACTCTTCCAGCTCTGACAGCCAATCAGAAGAG
Seq C2 exon
CCTGATTTTCCGGATCTGTTTCTTAATCAGTCCATTCACACGATTGAGTATTGCCTTGGCTGCATCTCTAATACTGCGTCTTACCTCCGCCTGTGGGCTCTCAGCCTGGCACATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'16-23,'16-22,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTTCTTGGTGATCGTTGCT
R:
GCATGTGCCAGGCTGAGAG
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]