RnoEX0013274 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37370867-37372302:-
Coord C1 exon
chr12:37372183-37372302
Coord A exon
chr12:37371619-37371738
Coord C2 exon
chr12:37370867-37370984
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGCTGGTCTTTTCTCTTTAGAGC
3' ss Score
9.58
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCACACGTCCAGAAGGTGTTGTTGGCTCTCACCGTGCTGGCTGTCCCTGTGCTCTTCTTGGGAAAGCCGCTCTTTCTGCTGTGGCTGCACAATGGGCGCAGTTGCTTCGGCGTGAGCCGG
Seq A exon
AGCGGCTACACGCTCGTGAGGAAGGACAGCGAGGAAGAGGTGTCTCTCCTAGGCAGCCAGGACATAGAGGAGGGGAACAACCGCATGGAAGAGGGCTGCCGAGAAATGACCTGTGAGGAG
Seq C2 exon
TTTAACTTCGGGGAGATCCTGATGACTCAGGCCATCCACTCCATCGAGTACTGCCTTGGCTGCATCTCCAACACTGCGTCCTACCTGAGGCTTTGGGCTCTCAGCCTGGCACACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'52-49,'52-48,53-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCCAGAAGGTGTTGTTG
R:
TGCGTGTGCCAGGCTGAG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]