HsaEX0006971 @ hg19
Exon Skipping
Gene
ENSG00000185344 | ATP6V0A2
Description
ATPase, H+ transporting, lysosomal V0 subunit a2 [Source:HGNC Symbol;Acc:18481]
Coordinates
chr12:124233122-124244441:+
Coord C1 exon
chr12:124233122-124233332
Coord A exon
chr12:124236830-124236949
Coord C2 exon
chr12:124242474-124244441
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTTTTGGTTGTTAGAGT
3' ss Score
6.39
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCACTTCAGGAAGAAGTTCAACATTTACCTGGTTTCCATCCCGGAACTTCTCTTCATGCTCTGTATCTTTGGATACCTTATATTTATGATTTTCTACAAGTGGCTGGTTTTTTCAGCAGAAACCTCCAGAGTTGCTCCCAGCATTCTGATTGAATTTATTAACATGTTTTTATTCCCAGCCAGTAAAACAAGTGGCCTTTACACAGGGCAG
Seq A exon
AGTGGCTACACACTTATAAGGAAAGATAGTGAGGAAGAAGTTTCATTGCTGGGAAGCCAAGATATAGAAGAGGGAAATCACCAGGTGGAAGATGGATGTAGAGAAATGGCGTGTGAAGAG
Seq C2 exon
GGTAGAATTTCAGAACAAATTCTACGTTGGTGCAGGCACCAAATTTGTTCCTTTCTCATTCAGTCTACTTTCATCAAAGTTCAATAACGACGACAGTGTGGCATGATCATATTGCTGTAACCAACAAGCTTTCAGATTTATGGAGAATGACCATGTTATAGACTTTCACTTATGTCAGATTTATGATAGGAAAAATTCCATCTTCATTACTGCCTTATGACATAGCCAAATAATTCTGTAAGATATACCTCTTCCTCATATGTTAAATATTTTGTAAAGTTTACCAATTTGAGATATAAAAATTTCTTTTGGTTTTTTATGATGAGCAAATATAAGTTAATGCCAAACGTTATGTTAAAGTTATTTTTTCAAATACAGGATTTGGGGAGAGAAGCCAATTTTGCATGGCTAGTTGAAAATGGTATTAGATACTTATTTCCTTTAAACTTTATTTAAAACAAACAACAGAGTTAATCTGTCACCTGAAGTTGCCAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185344_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.6=100)
A:
PF0149614=V_ATPase_I=PU(3.3=80.0)
C2:
PF0149614=V_ATPase_I=PD(17.1=67.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTACCTGGTTTCCATCCCG
R:
GGAACAAATTTGGTGCCTGCA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)