GgaEX6013594 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4910700-4912457:-
Coord C1 exon
chr15:4912338-4912457
Coord A exon
chr15:4911978-4912097
Coord C2 exon
chr15:4910700-4910817
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGCATTTCGATTTTGCAGCGT
3' ss Score
7.74
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTGGTCTACAGAGATTTTTACTGAGTGTTGCTTTTCTTTCTGTTCCTGTAATGCTTTTTGGAAAACCACTTTATCTATATTGGTTGCACAGTGGAAGTCGAGGCATTAGAACGTACAGG
Seq A exon
CGTGGCTACAAGCTCATTCGGAAAGAGAGTGAAGAAGAACTTTCTCTGCTGCAGCCTCATGATGTGGAGGAAGGAAGCAGTCACTCAGATAGTGGGCACAGAGAAGAGGATGGAGAGGAG
Seq C2 exon
TTTAATTTTGCAGATGCTTTTATGAATCAAGCCATTCATACCATTGAGTACTGTCTAGGATGTATTTCTAATACAGCATCGTATCTGAGACTCTGGGCATTAAGTCTTGCGCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.275 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTACAGAGATTTTTACTGAGTG
R:
GCATGCGCAAGACTTAATGCC
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]