MmuEX6021023 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124717886-124719166:+
Coord C1 exon
chr5:124717886-124718005
Coord A exon
chr5:124718439-124718558
Coord C2 exon
chr5:124719049-124719166
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTTTTCTCTTTAGAGC
3' ss Score
11.62
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCACACGTCCAGAGAGTGTTGGTGGCTCTCACGGTGCTGGCTGTCCCCGTGCTCTTCTTAGGAAAGCCGCTTTTTCTGCTGTGGCTGCACAACGGGCGCAATTGCTTTGGCATGAGCCGG
Seq A exon
AGCGGTTACACACTCGTGAGGAAGGACAGCGAGGAAGAGGTGTCTCTTCTGGGCAACCAGGACATAGAAGAGGGCAACAGCCGCATGGAAGAAGGCTGCCGAGAAGTGACGTGTGAGGAG
Seq C2 exon
TTTAACTTCGGGGAGATCCTGATGACGCAGGCCATCCACTCCATTGAGTACTGCCTCGGCTGCATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCACTCAGCCTGGCCCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'36-44,'36-43,38-44
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.474 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGTCCAGAGAGTGTTGG
R:
CATGGGCCAGGCTGAGTG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types