DreEX6010757 @ danRer10
Exon Skipping
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24577163-24579053:-
Coord C1 exon
chr5:24578966-24579053
Coord A exon
chr5:24577396-24577490
Coord C2 exon
chr5:24577163-24577320
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTCTCCAGTAGCAG
3' ss Score
4.61
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGCCATGTACCAATATCTGAGCGCCCATTATTGGGAATGGCCACTGCGAGTGGAGAAATCCAGCTTTACAAGCTTATCGAAGCTCAG
Seq A exon
CAGGGCTCCAGTGGTCTGGAGTGTGAGCTGAGCACAGATTTGGGTCCTGACAGACTGGCCTTGTCTTTAGACTGGTCCACAGGGCGAGGCGAGAG
Seq C2 exon
CAGTGATGTGCGTGTGGTGTCCAGTGACTCCACTGGCTCTCTCACACTGCTGTCTCTGGGGGAAGCAGATTTAACCGCTGTGTGTCAGTGGAAAGCTCACGAATATGAAGCCTGGATCTCAGCGTTTAGTTACTGGGATACTCAGACTGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083-'4-9,'4-6,5-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGGAGAAATCCAGCTT
R:
AAACGCTGAGATCCAGGCTTC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]