GgaEX6014809 @ galGal3
Exon Skipping
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1973929-1976358:+
Coord C1 exon
chr17:1973929-1974015
Coord A exon
chr17:1974765-1974859
Coord C2 exon
chr17:1976186-1976358
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCTTTCCAGTAGAAG
3' ss Score
6.55
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TGCCACGTTCCGGTTGCAGAACATCCCATGGTTGGCATTGCAAACTCGACGGGTGCTGTGGAGTTCTGCCACCTGACTGGCAGTGAG
Seq A exon
AAGAACAGCTGCATGTTGGAGCCTTGCTTCAGGGTCGATCTCGGTGCGCAACGCCTGGCCTTGTCCTTAGACTGGTCCACAGGACGTGAGCAGTG
Seq C2 exon
CTCTAGTGGATGTCCTTTGAGAGTGATCAGCAGTGATTCAGAGGGGAAGCTGAATCTGTTCTCCATAGATGAATCTGCGCCTTCTGTGCACGTCCTGAACCAGTGGGAGGCTCACAAGTTTGAGGCCTGGATTGCTGCTTTTAATTACTGGAACATTGATATAGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-'0-3,'0-2,1-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGCATTGCAAACTCGAC
R:
CCTCAAACTTGTGAGCCTCCC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]