MmuEX0052069 @ mm10
Exon Skipping
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24963456-24966674:+
Coord C1 exon
chr2:24963456-24963543
Coord A exon
chr2:24965560-24965654
Coord C2 exon
chr2:24966502-24966674
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTTTCTCTCCAGTAGAAC
3' ss Score
7.24
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGCCACATCCCAGTCTCTGGCCATGTGCTTTTAGGCTTGGCAAACGCCAGTGGATCCATAGGGCTGCTCCGCCTGATGGAATGTGAG
Seq A exon
AACAACAGTTACACCCTGCAGCCAATATCCAGCCTCGCCCTGGATGAGAATTGTCTGTCCTTGTCAATGGATTGGTCCACTGGGAAATCTGTCAG
Seq C2 exon
GGCCAGAGAACAGCCCTTGAAGATCATTAGCAGTGATTCTAAGGGGCAGTTGCACCTCCTGATGGTGAATGAGGGCACAGCTGAACTACAGCTAGTAGCATCTTGGCCAGCCCATCACTTTGAGGCCTGGATTGCTGCTTTCAATTACTGGCAGACAGAACTCGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-'4-8,'4-4,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGCCAGTGGATCCATA
R:
GCAATCCAGGCCTCAAAGTGA
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types