GgaEX6014809 @ galGal4
Exon Skipping
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1574248-1576678:+
Coord C1 exon
chr17:1574248-1574335
Coord A exon
chr17:1575085-1575179
Coord C2 exon
chr17:1576506-1576678
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCTTTCCAGTAGAAG
3' ss Score
6.55
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGCCACGTTCCGGTTGCAGAACATCCCATGGTTGGCATTGCAAACTCGACGGGTGCTGTGGAGTTCTGCCACCTGACTGGCAGTGAG
Seq A exon
AAGAACAGCTGCATGTTGGAGCCTTGCTTCAGGGTCGATCTCGGTGCGCAACGCCTGGCCTTGTCCTTAGACTGGTCCACAGGACGTGAGCAGTG
Seq C2 exon
CTCTAGTGGATGTCCTTTGAGAGTGATCAGCAGTGATTCAGAGGGGAAGCTGAATCTGTTCTCCATAGATGAATCTGCGCCTTCTGTGCACGTCCTGAACCAGTGGGAGGCTCACAAGTTTGAGGCCTGGATTGCTGCTTTTAATTACTGGAACATTGATATAGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-'1-3,'1-2,2-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGCATTGCAAACTCGAC
R:
CCTCAAACTTGTGAGCCTCCC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]