DreEX6010759 @ danRer10
Exon Skipping
Gene
ENSDARG00000078807 | C5H9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr5:24581521-24583150:+
Coord C1 exon
chr5:24581521-24581699
Coord A exon
chr5:24581789-24581839
Coord C2 exon
chr5:24583060-24583150
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTATTATTGTTTAGGTG
3' ss Score
10.27
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGTGCATGCAAGACTGGCAGAGCGTTTGTGAAGCTGCTGGAGGACAGTGCTGTGCTGCATTTAGGAGCTGAAGCCACAGATCTCAGCCTGTCTCTAGCAAAACTCACAGACTCTGAGGGAAGGATGGAAGTCAAGGACCTGCTCTTTAAAATGGCAGATAGCTTGCAACAACTAGATA
Seq A exon
GTGCTTCCTCTTCATTTAGTCCAGGCAAAGGTTATCAGAAGAGGAGTGCTG
Seq C2 exon
AATTTGAACCTAAAAAGCAGCATAAGGGTCCAGTAGTAGCAGTTAAAAAACGTCTTCCTGGAGATTCTCTCATCAACCCAGGAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078807-'3-5,'3-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.472 C2=0.790
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(33.2=100)
A:
PF153841=DUF4610=FE(9.1=100)
C2:
PF153841=DUF4610=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCACAGATCTCAGCCT
R:
ACTACTGGACCCTTATGCTGCT
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]