MmuEX6099544 @ mm10
Exon Skipping
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25459775-25460357:-
Coord C1 exon
chr2:25460167-25460357
Coord A exon
chr2:25460009-25460074
Coord C2 exon
chr2:25459775-25459859
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATGCCACGACTCTCTCTTAGCTG
3' ss Score
3.86
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGATAACCCTTTCAGGGGATACCCCTGCCCTGGCCTTTGACCTCTCCAAGGTGCCCAGCCCGGAGGCAGCCCCCAGGCTGCAGGCTTTGACTCTCAGCCTGGCAGAGCATGTATGCAACCTAGAGAGGCGGCTGGCAG
Seq A exon
CTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq C2 exon
AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGACGGTGTCCAGGGGAGTCTCTCATTAACCCTGGCTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-'7-14,'7-11,11-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.913 C2=0.971
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(32.5=100)
A:
PF153841=DUF4610=FE(11.2=100)
C2:
PF153841=DUF4610=FE(14.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCAAGAAGACAGAGCAT
R:
AGCTGCCTCTCTGGTGATCAA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types