RnoEX0063639 @ rn6
Exon Skipping
Gene
ENSRNOG00000015294 | Paxx
Description
PAXX, non-homologous end joining factor [Source:RGD Symbol;Acc:1306215]
Coordinates
chr3:2679282-2679870:-
Coord C1 exon
chr3:2679680-2679870
Coord A exon
chr3:2679522-2679587
Coord C2 exon
chr3:2679282-2679366
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATGCCATGGCTTTCTCCCAGCCA
3' ss Score
4.66
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGCCTGCCAACAGCAGGCAGTGACTGTAAGACTGCAAGAGGACAGAGCATTGATGACCCTTTCAGGGGATACCTCTGCCCTGGCCTTTGACCTCTCCAAGGTGCCCAGCCCAGAGGCAGCCCCCAGGCTGCAGGCTTTGACTCTCAGCCTGGCAGAGCATGTATGCAACCTGGAGAGGCGGCTGGCAG
Seq A exon
CCACAGAAGAGACCGCCATTAGCCCCAGGAAGAGCACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq C2 exon
AACTTGATCACCAGAGAGGCAGCTCTGGGTCTGGGGTCAGGAGACGGTGTCCAGGGGAGTCTCTCGTCAACCCTGGTTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015294-'8-9,'8-6,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.913 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(32.5=100)
A:
PF153841=DUF4610=FE(11.2=100)
C2:
PF153841=DUF4610=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGCAAGAGGACAGAGCA
R:
GCTGCCTCTCTGGTGATCAAG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]