HsaEX0011632 @ hg38
Exon Skipping
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr9:136993053-136993664:+
Coord C1 exon
chr9:136993053-136993243
Coord A exon
chr9:136993343-136993411
Coord C2 exon
chr9:136993580-136993664
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCATGGGCTTTCCTCCCCAGCTG
3' ss Score
8.45
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGCCTGTGAGCAGCAAGCTGTGGCTCTGACTCTGCAGGAGGACAGAGCATCCCTGACGCTTTCAGGGGGGCCCTCGGCACTGGCCTTTGACCTCTCCAAGGTACCAGGCCCAGAGGCAGCCCCCAGGCTGCGGGCGCTGACACTGGGCCTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAG
Seq A exon
CTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCGGCCTGCAGGGCCTCAGCTCTTCTTACCAG
Seq C2 exon
ACCCAGATCCCCAGAGAGGTGGCCCTGGACCTGGAGTCAGGAGGCGGTGTCCAGGAGAGTCGCTCATCAACCCCGGGTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.917 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(32.3=100)
A:
PF153841=DUF4610=FE(11.6=100)
C2:
PF153841=DUF4610=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCCTTTGACCTCTCCAA
R:
GATGAGCGACTCTCCTGGACA
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development