DreEX6010790 @ danRer10
Exon Skipping
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24603115-24603756:-
Coord C1 exon
chr5:24603582-24603756
Coord A exon
chr5:24603371-24603486
Coord C2 exon
chr5:24603115-24603262
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTCCGCCCCTTTAGCTG
3' ss Score
8.64
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTCCAGGGCACTGATGTGGTTATTGCCATCTTCATCATTGTAGCCATGTCTTTCGTGCCTGCGAGCTTTGTGGTCTTTCTGGTAGCGGAAAAATCCACCAAAGCCAAACACCTGCAGTTTGTCAGCGGATGCGACCCTGTCACGTACTGGCTAGCAAACTACATATGGGACATG
Seq A exon
CTGAACTACCTGGTTCCAGCTACATGCTGTGTCCTAATTTTGTTTGTGTTCGACCTTCCTGCGTACACGTCACCTACAAATTTCCCAGCAGTGCTCTCTCTGTTTCTGCTTTATGG
Seq C2 exon
CTGGTCTATAACCCCCATCATGTACCCAGCCTCCTTCTGGTTTGAGGTGCCCAGCACAGCTTATGTTTTCCTCATAGTCATCAATCTCTTCATTGGCATCACAGCCACGGTGGCCACTTTCCTCCTCCAGCTGTTTGAGCGCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500-'40-44,'40-43,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.7=100)
A:
PF126982=ABC2_membrane_3=FE(12.3=100)
C2:
PF126982=ABC2_membrane_3=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGAGCTTTGTGGTCTTT
R:
ACAGCTGGAGGAGGAAAGTGG
Band lengths:
251-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]