RnoEX0004837 @ rn6
Exon Skipping
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2664434-2665030:+
Coord C1 exon
chr3:2664434-2664608
Coord A exon
chr3:2664689-2664778
Coord C2 exon
chr3:2664883-2665030
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTCCGCCTTCGCCTTTGCAGCTC
3' ss Score
10.95
5' ss Seq
GCGGTGCTC
5' ss Score
-1.09
Exon sequences
Seq C1 exon
ACTGCAGGGCACAGACGTGGTCATCGCCATCTTCATCATTGTGGCCATGTCCTTCGTGCCGGCCAGCTTCGTGGTCTTCCTTGTGGCCGAGAAATCCACCAAGGCCAAACACCTGCAGTTCGTCAGCGGGTGCAACCCTGTCATCTACTGGCTAGCCAACTACGTGTGGGACATG
Seq A exon
CTCAATTACCTGGTCCCGGCCACCTGCTGCATCATCATCCTCTTCGTGTTTGACTTGCCGGCCTACACGTCACCCACCAACTTCCCCGCG
Seq C2 exon
ATGGTCCATCACACCCATCATGTACCCGGCCTCCTTCTGGTTTGAGGTCCCTAGCTCAGCCTACGTGTTCCTCATCGTCATCAACCTCTTCATTGGCATCACGGCCACAGTGGCCACCTTCCTTCTGCAGCTCTTTGAGCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268-'54-64,'54-63,55-64
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.0=100)
A:
PF126982=ABC2_membrane_3=FE(13.1=100)
C2:
PF126982=ABC2_membrane_3=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTCGTGGTCTTCCTTG
R:
GTAGGCTGAGCTAGGGACCTC
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]