GgaEX1005362 @ galGal4
Exon Skipping
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:425772-426548:-
Coord C1 exon
chr17:426374-426548
Coord A exon
chr17:426178-426293
Coord C2 exon
chr17:425772-425919
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAAGTTTCTGTCCTCTCCAGCTG
3' ss Score
8.45
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCTGCAAGGCACAGATGTGGTGATTGCCATCTTCATCATCGTGGCCATGTCCTTTGTGCCAGCCAGCTTTGTGGTGTTCCTGGTAGCTGAGAAGGCCACCAAGGCCAAACACCTGCAGTTTGTGAGCGGCTGTGACCCTGTCATCTACTGGCTGGCCAACTACGTGTGGGATATG
Seq A exon
CTGAACTACCTGGTGCCGGCCACGTGCTGTATCATTATCCTGTTTGTGTTTGACCTCCCGGCATACACCTCTCCCACCAACTTCCCTGCTGTCCTCTCACTCTTCCTGCTGTATGG
Seq C2 exon
CTGGTCCATCACCCCCATCATGTACCCTGCCTCCTTCTGGTTTGAGGTGCCCAGCTCTGCCTATGTCTTCCTCATCGTCATCAACCTCTTCATTGGCATCACGGCCACCGTTGCCACGTTCCTGCTGCAACTCTTTGAGCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.6=100)
A:
PF126982=ABC2_membrane_3=FE(11.6=100)
C2:
PF126982=ABC2_membrane_3=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTGTGGTGTTCCTGGT
R:
GCTCAAAGAGTTGCAGCAGGA
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]