MmuEX6099513 @ mm9
Exon Skipping
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25299590-25300189:+
Coord C1 exon
chr2:25299590-25299764
Coord A exon
chr2:25299845-25299960
Coord C2 exon
chr2:25300042-25300189
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCACCTTCACCTTTGCAGCTC
3' ss Score
8.58
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGTCCTTCGTGCCAGCCAGCTTTGTGGTCTTCCTTGTGGCAGAGAAATCCACCAAGGCCAAACACCTGCAGTTCGTCAGCGGGTGCAACCCTGTCATCTACTGGCTGGCCAACTACGTGTGGGACATG
Seq A exon
CTCAATTACCTGGTCCCAGCCACCTGCTGCGTGATCATCCTCTTTGTCTTTGACTTACCTGCCTACACATCACCCACCAACTTCCCCGCGGTGCTCTCCTTGTTCCTGCTCTATGG
Seq C2 exon
GTGGTCCATCACACCCATCATGTACCCAGCCTCCTTCTGGTTTGAGGTCCCTAGCTCAGCCTACGTGTTCCTCATCGTCATCAACCTCTTCATCGGCATCACAGCCACGGTGGCCACTTTCCTTCTGCAGCTTTTTGAGCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.0=100)
A:
PF126982=ABC2_membrane_3=FE(12.5=100)
C2:
PF126982=ABC2_membrane_3=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGTGGCCATGTCCTTCG
R:
GCTGTGATGCCGATGAAGAGG
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: