DreEX6011224 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28589368-28590852:-
Coord C1 exon
chr5:28590761-28590852
Coord A exon
chr5:28590402-28590581
Coord C2 exon
chr5:28589368-28589516
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTCTGTTTCTTTCAGCCG
3' ss Score
9.96
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTGGCGTGGAGCTGTGATCGAAGAAGAACAAGCCTCTGATACTGACACCAAAGACACAGAAAACCAAGGAGACCCAGCTTCATTAGCACTTG
Seq A exon
CCGAGAGTAGACTGGAGGCTGTGAGAGAAGCTTTTAGACATGCCTGGAAAGGTTACAAGGACTTCGCTTGGGGTCACGATGAACTCAAACCAATCTCTAAATCATACGGAGAGTGGTTTGGACTTGGGCTGACCCTAATTGATGCTCTAGATACCATGTGGATCTTGGGTCTACAAGAAG
Seq C2 exon
AGTTTGCAGAGGCCAGGGAGTGGGTGGCCAAAGAGCTCTCTTTCGATAAGAATGTGGATGTTAATCTGTTCGAGAGCACCATTCGTATCCTGGGTGGCCTACTGAGTACCTACCATCTCACAGGAGACAACCTTTTCCTGGATAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'6-10,'6-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0153215=Glyco_hydro_47=PU(11.4=82.0)
C2:
PF0153215=Glyco_hydro_47=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGCTGTGATCGAAGAA
R:
AGCTTTATCCAGGAAAAGGTTGTCT
Band lengths:
237-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]