RnoEX0052025 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2554951-2559480:+
Coord C1 exon
chr3:2554951-2555060
Coord A exon
chr3:2557550-2557735
Coord C2 exon
chr3:2559332-2559480
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTCTCTTCTCCAGCTC
3' ss Score
10.66
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGGCGGGGAGCAGTAATTGAGCCTGAACAGGCCACTGAACCTCCTTCCAAAAGAGCTGAAGCCTCCATCAAGCCTCTGTTTTTGGCGTCCAGGATATGGAAAGAGCCAG
Seq A exon
CTCCCCCAAATGAGCGCCAGAAGGGAGTGATTGAGGCCTTTCTCCATGCTTGGAAAGGTTACCAAAAGTTCGCTTGGGGCCATGATGAACTGAAGCCTGTGTCCAAAACCTTCAGTGAGTGGTTTGGCCTGGGCCTCACCCTGATCGATGCCTTGGATACCATGTGGATTTTGGGTCTGAAGCAAG
Seq C2 exon
AATTTAAGGAAGCCAGGAAGTGGGTGTCGGAGAACTTAGACTTTCAGAAGAATGTCGATGTCAACCTGTTTGAGAGTACTATCCGAATCTTAGGGGGCCTGCTGAGTGCCTACCACCTGTCTGGGGACAGCCTCTTCCTGAGCAAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
C2:
PF0153215=Glyco_hydro_47=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGCAGTAATTGAGCCTG
R:
CTTGCTCAGGAAGAGGCTGTC
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]