MmuEX6099478 @ mm9
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25197127-25200636:+
Coord C1 exon
chr2:25197127-25197236
Coord A exon
chr2:25198744-25198929
Coord C2 exon
chr2:25200488-25200636
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCATATTTTCTCTTCTCTAGCCC
3' ss Score
9.57
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGGCGGGGAGCCGTGATTGAGCCTGAACAGGCCACTGAACTTCCTTACAAAAGAGCTGAAGCCTCCATCAAACCTCTGGTTTTGGCATCCAAGATATGGAAAGAGCCAG
Seq A exon
CCCCCCCGAATGAGCGCCAGAAGGGAGTGATTGAGGCCTTTCTCCATGCTTGGAAGGGTTACCAAAAGTTTGCTTGGGGCCATGATGAACTAAAACCTGTGTCCAAAACCTTCAGTGAGTGGTTTGGCCTGGGCCTCACCCTGATCGATGCCTTGGATACCATGTGGATTTTGGGTCTGAAGCAAG
Seq C2 exon
AATTTAAGCAAGCCAGGAAATGGGTATCAGAGAACTTAGACTTTCAGAAGAATGTTGATGTCAACCTGTTTGAGAGCACCATTCGCATCTTAGGGGGCCTGCTGAGTACCTACCACCTGTCGGGGGACAGCCTCTTCCTGACCAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.072 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
C2:
PF0153215=Glyco_hydro_47=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTGATTGAGCCTGAAC
R:
GCTTTGGTCAGGAAGAGGCTG
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: