GgaEX1034689 @ galGal3
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:721081-726621:-
Coord C1 exon
chr17:726512-726621
Coord A exon
chr17:724364-724549
Coord C2 exon
chr17:721081-721229
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTTCCTTTTGCAGTGC
3' ss Score
10.47
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTGGAGAGGAGCAGTGATAGAACCTGACCAAAGCAGTGAACCTCCATCTAGTAGAGTAAAGGAACCAGAAAAACCTTCATCTGTGGAAGGTGAAAGCCAGAAAGAACCAG
Seq A exon
TGCCCATAAACGAACGTCAGATGGCTGTGATAGAAGCCTTCCGCCACGCGTGGAAAGGATACAAAGATTTTGCCTGGGGCCATGATGAACTGAAGCCATTATCCAAGTCTTACAGTGAGTGGTTTGGCCTCGGGCTTACCTTGATTGATGCCTTGGATACTATGTGGATTTTAGGCCTGAGAGAAG
Seq C2 exon
AGTTTGAAGAAGCAAGAAAATGGGTAGCAAACGATTTAGCCTTTGATAAAAATGTGGATGTGAACCTGTTTGAGAGCACTATTCGTATTCTGGGTGGCTTACTGAGCACCTACCATCTCTCTGGAGATAGCCTCTTCCTGGAAAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'6-11,'6-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
C2:
PF0153215=Glyco_hydro_47=FE(11.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTGATAGAACCTGACC
R:
AGCTTTTTCCAGGAAGAGGCT
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]