DreEX6011308 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28908596-28910368:-
Coord C1 exon
chr5:28910262-28910368
Coord A exon
chr5:28909939-28910173
Coord C2 exon
chr5:28908596-28908741
Length
235 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCAAACCCTGCAGGAA
3' ss Score
9.27
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCCCCAAGAAGAAGAAAAGAAAAATGGGTTTATATAATTTTGTTCCCAAAAAGAAACCGAAAGGGTCCAAGAAAGCGAATGTGTCGTTATCCTCCTCAAATCTGCAG
Seq A exon
GAAGCTTTACGTATGACCGGGTCCAAGGGTGGACAGATGTCTATTGAGGAGGCATTCAGAAATAAAGCTAGTTCTGAGAAACCAGAGAAACAGACTTCAACTGCTGTGATAGAGGATGCAGAACCGCACCAGAACAAAGAAACTGAGGATGCTCCAGAAGGCCCTGCTGAGGAATACACAGAGCTGCCTTTACATGCTCTGGCTCATGATAGCTTGTTCACAACAATCCCCACAG
Seq C2 exon
GCTTACGGGAGGATAAAGAGAACATGGAAACTGATGACACGTTAGAGCCTCCACTGTGTAGCTGCCGCATGGAGACGCCAAAGAACCAGGATGTAGTCACACTGGCTGAGGGCAAGTGCATGGCTGTGGAGAGTGTTGATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'8-12,'8-9,9-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.899 C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAAGAAGAAGAAAAGAAAA
R:
TTCCCATCAACACTCTCCACAG
Band lengths:
252-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]