BtaEX0012559 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105470185-105477892:-
Coord C1 exon
chr11:105477756-105477892
Coord A exon
chr11:105477447-105477635
Coord C2 exon
chr11:105470185-105470262
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCGTCTGCCCTCTTCCAGGGT
3' ss Score
11.11
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CAGCTGCAGTATCTCGGAAGAAAAAGCGAAGAATGGGAACCTATAGCCTGGTTCCTAAGAAAAAGACCAAAGTGTTAAAGCAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACGGGGGGTTCCAAG
Seq A exon
GGTGAGAAGGATCTGAGCGATGGCTCCCTCCATGTGAACGGTGAGAGCCTGGATCTGGACTCGGAGGAGGATGACTCGGAGGAGCTGGACGAGGATGAGGACCAGGGCGGCCCACCAGCAGCTGCGTTCCCTACTGAGGATGGCAGGGCCTCCAAGGATGGCGTGTTGGCGCCTGACTGCAGCCAGAAG
Seq C2 exon
GTGGACGGCGAGTCTGAAGAGGAGCAGGAGTCGGCCGGCACCGCGGACGAGGAGGAGGACGGAGACGAGTCCGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148_MULTIEX1-3/14=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCAGTATCTCGGAAGA
R:
CGGACTCGTCTCCGTCCTC
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development